Extracting clonal genotypes

[jmfa]

Dear Victoria,

Is there a simple way to extract the genotypes of the clones inferred by Lichee? While the output (*trees.txt) contains which mutations occur at which clone (and the samples at which each clone is present), I was wondering if there's an option to get the actual clonal genotypes (e.g., Clone 1: AGCGGTCAAGGGACG.., etc).

Thank you very much in advance. Joao