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How can I autoindex the HPRC graph using '--workflow map' correctly?
Hi.
I have tried some ways to autoindex the HPRC graph, but I can't index it correctly.
When I use the command vg autoindex --workflow map -g chr21.gfa -T tmp
, I seem to remember that it said timeout.
And then I vg mod -X 32
the graph, and use command vg autoindex --workflow map -g chr21.mod32.gfa -T tmp
, it also failed:
The graph I used is the hprc-v1.1-mc-grch38.chr21.vg, and convert it to gfa
graph.
Do you have any suggestions for indexing this graph?
How much RAM do you have?
About 300GB