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Published 20 hours ago • verified publisher icon vgteam

vg call to GVCF

Open biopig opened this issue 1 year ago • 1 comments

I have a population of 200 individuals, and I know that I can generate VCFs using VG calls. But I want to know how to merge the generation into GVCF, which includes all sample variation information.

biopig avatar Sep 13 '23 06:09 biopig

I'm not sure about gvcf, but if you use vg call -a I think bcftools merge should be able to combine your vcfs.

glennhickey avatar Sep 18 '23 15:09 glennhickey