FRC_align
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Compile error
Hey, i also got stuck in the compile process and can't find any solution. the compiling works till 47%, and then the error output I have done everything according the description and loaded lib/boost/1.56.0 (working on a cluster) I would be very glad I you could give me a hint, what to do next. Warm regards
-----|cmake ..|
-- The C compiler identification is GNU 4.4.7 -- The CXX compiler identification is GNU 4.4.7 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done Boost found. Found Boost components: program_options;system;filesystem -- Configuring done -- Generating done -- Build files have been written to: /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/build
-----|make|
[...%]
[ 34%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
[ 35%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
[ 36%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
[ 37%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
[ 39%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
[ 40%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
[ 41%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
[ 42%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
[ 43%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
[ 45%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
[ 46%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
Linking CXX shared library libbamtools.so
[ 46%] Built target BamTools
Scanning dependencies of target FRC
[ 47%] Building CXX object CMakeFiles/FRC.dir/src/FRC_align.cpp.o
In file included from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/data_structures/Contig.h:17,
from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/data_structures/FRC.h:20,
from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/FRC_align.cpp:35:
/home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/common.h: In function ‘LibraryStatistics computeLibraryStats(std::string, uint64_t, uint32_t, bool)’:
/home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/common.h:215: error: ‘struct std::basic_string<char, std::char_traits
Hi,
Did you find a solution for this? I get the same error.
Never mind. Found out what the problem was. I was using an old version of Boost.
Hi, thanks for using this software. Most likely the problems are due to how boost is installed. In my todo list there is the task to remove boost dependency for FRCbam....