velocyto.py
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Passing velocyto samtools memory for sorting step
I am running velocyto on slurm. I tried to pass samtools memory spec via
--samtools-memory 64G
and
--samtools-memory $((8*8042))
Both times I received an error.
Error: Invalid value for '--samtools-memory': '64G' is not a valid integer.
samtools sort: couldn't allocate memory for bam_mem
How do I pass 64GB memory to samtools via the velocyto command line call?