velocyto.py
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velocyto on non-UMI bam -U flag
I am trying to run velocyto run on a non-UMI bam file aligned using STAR. I am using -U flag, however velocyto still tries to find cell and UMI codes and I get the following error: OSError: The bam file does not contain cell and umi barcodes appropriately formatted. If you are running UMI-less data you should use the -U flag.
Command: velocyto run -o $output -m $rmsk -U bam.bam $gtf
I am experiencing same issue
Same here. Version 0.17.17