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Published 20 hours ago • verified publisher icon velocyto-team

mac m1 velocyto error

Open parkjooyoung99 opened this issue 2 years ago • 6 comments

image

i create conda environment and installed velocyto without error. However, when i tried to run velocyto, it keeps giving this error. i have checked python info and it is already image

does anyone can help me?

parkjooyoung99 avatar May 17 '22 02:05 parkjooyoung99

@parkjooyoung99 It seems to be related to compilers and there is an old issue about this, https://github.com/velocyto-team/velocyto.py/issues/53. You might want to try the steps suggested by the author.

michaeleekk avatar May 20 '22 14:05 michaeleekk

I've met similar issue with my M1 mac. Installation steps are fine but when I test it with "velocyto --help", it raises the error that "ImportError: dlopen(/Users/meganqiu/opt/anaconda3/envs/velo/lib/python3.9/site-packages/velocyto/speedboosted.cpython-39-darwin.so, 0x0002): tried: '/Users/meganqiu/opt/anaconda3/envs/velo/lib/python3.9/site-packages/velocyto/speedboosted.cpython-39-darwin.so' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64'))".

No idea what to do now. Have you already figured it out?

MeganQiu avatar Jun 27 '22 11:06 MeganQiu

I have the same issue on my M1 mac. The issue pointed by @michaeleekk does not solve the problem, since velocyto is installed without error. Could you provide some help on this?

agreco92 avatar Sep 21 '22 16:09 agreco92

I have the same issue on my M1 mac. The issue pointed by @michaeleekk does not solve the problem, since velocyto is installed without error. Could you provide some help on this?

Yes, me too. Any suggestion?

JieShengm avatar Oct 19 '22 14:10 JieShengm

Also having the same issue on an M1 mac despite using arch -x86_64 pip velocyto

seburgess avatar Feb 13 '23 22:02 seburgess