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Published 20 hours ago • verified publisher icon velocyto-team

If I analyze snRNA seq data, which parameter should I use?

Open ChristopherLeeZG opened this issue 4 years ago • 1 comments

If I analyze Single-nuclei RNA-seq (snRNA-seq) data, which parameter should I use? I don't know run10x and run_dropest which one I should use. Or velocyto can't analysis snRNA-seq data?

Thanks for reply!

ChristopherLeeZG avatar Oct 28 '20 07:10 ChristopherLeeZG

I have the same question, I appreciate that velocyto can work on snRNA based on another issue, but shall we use the output from Cellranger by setting "include-introns" flag or not, please?

jon-xu avatar Oct 26 '21 06:10 jon-xu