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velocyto taking over 10 hours and still running

Open CJ1017 opened this issue 5 years ago • 1 comments

Hi,

I'm running velocyto on a server and I have generated a -CB sorted bam file and running velocyto run -b barcodes.tsv -o samplefolder possorted_genome_bam.bam genes.gtf
and it's been running for over 10 hours, and currently "2020-01-29 06:09:04,400 - DEBUG - Counting for batch 13, containing 100 cells and 16195081 reads" I have read that the process shouldn't take more than 4-5 hours. I'm hoping someone may be able to provide some insight on what may be the issue here?

Thanks.

CJ1017 avatar Jan 29 '20 11:01 CJ1017

have your problem been solved? i have met the same question

Dan-121 avatar Nov 13 '20 06:11 Dan-121