FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future

[zonglunli7515]

I'm now trying to reproduce the results from https://github.com/velocyto-team/velocyto-notebooks/blob/master/python/DentateGyrus.ipynb

Unfortunately, vlm.estimate_transition_prob(hidim="Sx_sz", embed="ts", transform="sqrt", psc=1, n_neighbors=2000, knn_random=True, sampled_fraction=0.5) raises warning:

FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future

Can anyone help me resolve this?

Thanks in advance for your help!

Allen

[tanpuekai]

same problem.

[zhuochunli]

same warning

[zeysert]

same issue