velocyto.R
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Problem running read.loom.matrices command
Hi, I'm having trouble reading in previously generated loom files. When I try to run read.loom.matrices() I keep getting the following error.
I have R 3.6.1, gcc 5.5.0, and have openmpi, hdf5, and boost installed.
Thanks.
loom<- read.loom.matrices(file) reading loom file via hdf5r...
*** caught illegal operation *** address 0x2b6ee0949123, cause 'illegal operand'
Traceback: 1: fun(libname, pkgname) 2: doTryCatch(return(expr), name, parentenv, handler) 3: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 5: tryCatch(fun(libname, pkgname), error = identity) 6: runHook(".onLoad", env, package.lib, package) 7: loadNamespace(name) 8: getNamespace(ns) 9: asNamespace(ns) 10: getExportedValue(pkg, name) 11: hdf5r::H5File 12: read.loom.matrices(file)
Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace
I am new to velocyto and trying tutorial data, 10X43_1.loom file. Seeing this message for couple of hours now! reading loom file via hdf5r.... Does it take hours to load loom file? Can anyone comment! Thanks.