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Problem running read.loom.matrices command

Open CJ1017 opened this issue 4 years ago • 1 comments

Hi, I'm having trouble reading in previously generated loom files. When I try to run read.loom.matrices() I keep getting the following error.
I have R 3.6.1, gcc 5.5.0, and have openmpi, hdf5, and boost installed.

Thanks.

loom<- read.loom.matrices(file) reading loom file via hdf5r...

*** caught illegal operation *** address 0x2b6ee0949123, cause 'illegal operand'

Traceback: 1: fun(libname, pkgname) 2: doTryCatch(return(expr), name, parentenv, handler) 3: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 5: tryCatch(fun(libname, pkgname), error = identity) 6: runHook(".onLoad", env, package.lib, package) 7: loadNamespace(name) 8: getNamespace(ns) 9: asNamespace(ns) 10: getExportedValue(pkg, name) 11: hdf5r::H5File 12: read.loom.matrices(file)

Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace

CJ1017 avatar Mar 21 '20 14:03 CJ1017

I am new to velocyto and trying tutorial data, 10X43_1.loom file. Seeing this message for couple of hours now! reading loom file via hdf5r.... Does it take hours to load loom file? Can anyone comment! Thanks.

visaxena2870 avatar May 20 '20 18:05 visaxena2870