Calculating end and starting points with Markov model

[s849]

Hi all,

I am running velocyto in R with no problems so far. I am interested in calculating starting and end points using the Markov model forward/backward diffusion. I know this is possible with the Python version of velocyto. My question is, is it possible to run this in the R version?

Thanks!

[lhendrikse]

Not the developer but I don't think it is currently possible in the R version.

Having said that, it would be great. @pkharchenko any plans to implement this in the R version? (or any tips on the best way to go from "gene.relative.velocity.estimates objects" in R to python to run the markov walk step?)