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Qi: I experience unable to read in the trial loom file showed as below, any suggestions? Thank you very much.
Dear velocyto-team:
I experience unable to read in the trial loom file showed as below, any suggestions? Thank you very much.
The Error Messenge:
vlm = vcy.VelocytoLoom("/data/DentateGyrus.loom") Traceback (most recent call last): File "
", line 1, in File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/velocyto/analysis.py", line 58, in init ds = loompy.connect(self.loom_filepath) File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/loompy/loompy.py", line 1389, in connect return LoomConnection(filename, mode, validate=validate) File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/loompy/loompy.py", line 84, in init self._file = h5py.File(filename, mode) File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/h5py/_hl/files.py", line 408, in init swmr=swmr) File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/h5py/_hl/files.py", line 175, in make_fid fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5f.pyx", line 88, in h5py.h5f.open OSError: Unable to open file (unable to lock file, errno = 11, error message = 'Resource temporarily unavailable')
Qi