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Training materials for setting up and using a research infrastructure based on Jupyter notebooks: https://cusy.io/en/seminars

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Quick start

.. _badges:

Status

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.. _first-steps:

Installation

#. Download and unpack:

.. code-block:: console

$ curl -O https://codeload.github.com/veit/jupyter-tutorial/zip/main
$ unzip main
Archive:  main
…
   creating: jupyter-tutorial-main/
…

#. Install Python packages:

.. code-block:: console

$ cd jupyter-tutorial-main
$ python3 -m venv .
$ . bin/activate
$ python -m pip install -r docs/requirements.txt

#. Install the Jupyter Notebook Extensions <https://jupyter-contrib-nbextensions.readthedocs.io/>_ Javascript and CSS files:

.. code-block:: console

$ jupyter contrib nbextension install --user
jupyter contrib nbextension install --user
Installing jupyter_contrib_nbextensions nbextension files to jupyter data directory
…
Successfully installed jupyter-contrib-core-0.3.3 jupyter-contrib-nbextensions-0.5.1
jupyter-highlight-selected-word-0.2.0 jupyter-latex-envs-1.4.6
jupyter-nbextensions-configurator-0.4.1
…
$ jupyter nbextension enable latex_envs --user --py
Enabling notebook extension latex_envs/latex_envs...
      - Validating: OK

#. Create HTML documentation:

Note that pandoc has to be installed. On Debian/Ubuntu you can just run

.. code-block:: console

$  sudo apt install pandoc

To create the HTML documentation run these commands:

.. code-block:: console

$ cd docs/
$ make html

#. Create a PDF:

For the creation of a PDF file you need additional packages.

For Debian/Ubuntu you get them with the following command:

.. code-block:: console

$ sudo apt install texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended latexmk

or for macOS with:

.. code-block:: console

$ brew cask install mactex
…
🍺  mactex was successfully installed!
$ curl --remote-name https://www.tug.org/fonts/getnonfreefonts/install-getnonfreefonts
$ sudo texlua install-getnonfreefonts
…
mktexlsr: Updating /usr/local/texlive/2020/texmf-dist/ls-R...
mktexlsr: Done.

Then you can generate a PDF with:

.. code-block:: console

$ make latexpdf
…
The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
…

You can find the PDF at docs/_build/latex/jupytertutorial.pdf.

#. Install vnd run ale to check spelling

You can install Vale with:

.. code-block:: console

$ brew install vale

You can install the parser for Restructuredtext with:

.. code-block:: console

$ brew install docutils

.. seealso:: * Vale installation <https://docs.errata.ai/vale/install>_ * Vale formats <https://docs.errata.ai/vale/scoping#formats>_

Now you can check the RestructuredText files with:

.. code-block:: console

$ vale .
✔ 0 errors, 0 warnings and 0 suggestions in 201 files.

.. _follow-us:

Follow us

  • GitHub <https://github.com/veit/jupyter-tutorial>_
  • Twitter <https://twitter.com/JupyterTutorial>_
  • Mastodon <https://mastodon.social/@JupyterTutorial>_

Pull-Requests

If you have suggestions for improvements and additions, I recommend that you create a Fork <https://github.com/veit/jupyter-tutorial/fork>_ of my GitHub Repository <https://github.com/veit/jupyter-tutorial/>_ and make your changes there. . You are also welcome to make a pull request. If the changes contained therein are small and atomic, I’ll be happy to look at your suggestions.