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Add the modified pseudo F statistic from Anderson et al 2017 to account for heterogeneity in adonis/adonis2

Open gavinsimpson opened this issue 2 years ago • 2 comments

Anderson et al (2017: doi: 10.1111/anzs.12176) have proposed a modification to the pseudo F statistic in PERMANOVA that accounts for group heterogeneity.

The modified F is:

Screenshot from 2022-02-28 13-11-21

and provide an efficient way to get the group dispersions from the projection matrix that forms part of the calculation of F. This should fit nicely with our permutation-based testing.

Anderseon et al (2017) also provide two bootstrap-based testing options which we might explore, but these are of lesser priority.

Thoughts? (I can pass on the paper if you don't have access to it)

gavinsimpson avatar Feb 28 '22 12:02 gavinsimpson

I would really need this modified F as my data have a very unbalanced design and the dispersion is heavily inhomogeneous in different groups. H would be really happy to see this implemented but unfortunately I’m not able to do it.

MoREpro avatar Aug 03 '23 09:08 MoREpro

Same here.

caonetto avatar Sep 11 '23 08:09 caonetto