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Scale bar in Phylotree.js

Open bonfaceonyango opened this issue 11 months ago • 2 comments

What are the units of the scale bar used in phylotree.js? Is it to showing the percentage distance between the nodes of the phylogeny tree? Like 0.04 is 40%

bonfaceonyango avatar Feb 28 '24 14:02 bonfaceonyango

Dear @bonfaceonyango,

It's whatever the branches are scaled in. Typically, expected substitutions/site/unit time. So 0.04 would be ~4%.

Best, Sergei

spond avatar Feb 28 '24 14:02 spond

Thank you for the clarification

bonfaceonyango avatar Feb 28 '24 14:02 bonfaceonyango