an issue while running hivtrace

[arya-aa]

Hi Steven,

I am encountering an issue while running hivtrace with the following command:

hivtrace -i /home/mj/input.fas -a resolve -r HXB2_prrt -t .015 -m 500 -g .015 --log /home/mj/hivtrace.log The error traceback I'm getting is:

Traceback (most recent call last): File "/home/mj/.local/bin/hivtrace", line 8, in sys.exit(main()) File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 793, in main results = hivtrace( File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 523, in hivtrace subprocess.check_call(tn93_process, stdout=tn93_fh, stderr=tn93_fh) File "/usr/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['tn93', '-q', '-0', '-o', '/tmp/hivtrace-ogsh8pkl/2018-2020MSM_0413.fas_user.tn93output.csv', '-t', '.015', '-a', 'resolve', '-l', '500', '-g', '.015', '-f', 'csv', '/home/mj/2018-2020MSM_0413.fas_output.fasta']' returned non-zero exit status 1.

Could you please help me understand what might be causing this issue? Here are some additional details: Operating system: Ubuntu 20.04 LTS Python version: 3.11.9 gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) version: 9.4.0 tn93 version: 1.0.14