covidcg

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Consistent SNV colors

1

SNV colors are updating as new SNVs are added, so the colors are changing since they're based on list indices Maybe calculate a hash based on the SNV string, and...

atc3

Add histogram of all sequences under location-date plot

2

This should help with identifying any bias caused by a lack of sequencing. Also fix the y-axis labels for percentage mode

atc3

Allow range selection from our GroupStack plot Basic workflow for this: 1. Capture shift-click events and bubble them up to React to handle 2. Since Vega (and not React) determines...

atc3

Select multiple lineages/SNVs from legend (ctrl+click, shift+click)

2

This should be easy to do in the legend and the table since everything is in a list. Not sure how i'll do that logic for the barplot though

atc3

Since we can't adjust the (erroneous) collection dates themselves, maybe change the definition so that we're cutting off at the 10th collected sequence instead of the 1st.

atc3

Hi, location_id : 1686 is non-existing, and it is referenced by 48 sequences. Same for 4159 (236 sequences). I don't know since when it is there. Your script creating new...

babarlelephant

See: https://nextstrain.org/blog/2020-06-02-SARSCoV2-clade-naming These are same clades as on Nextstrain

atc3

chan-solo

Not sure how I'll do this in the table layout. It might be constrained to one primer at a time - and have an extra row in the table (like...

atc3