covidcg
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vector-engineering
A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
In addition to a percentage metric relative to the selected/filtered sequences, also add a percentage metric to all sequences given the location/date. This will need to be calculated separately on...
From Dave at AZ: > I’m wondering if the team would entertain a change to the main splash page to display a stacked bar chart (new percentages) instead of the...
* Show multiple entropy plots, one for each gene/protein * Change dropdown selector to a multi-select dropdown (same as in metadata)
Hello, This site is my go-to resource for identifying lineages based on mutations in wastewater, and I've been sharing it with colleagues who really appreciate it, too. I am now...
Right now all sequences are uploaded every day - this will start to overrun our 24-hour update schedule Proposal: - Upload sequence hash alongside sequence - Before upload, download complete...
From Irwin: > In addition to showing primers for PCR tests, it would be nice to show the epitopes used for antigen tests such as the BinaxNow We've also had...
From Irwin: > Under Lineage Reports, the mutation list does not include mutations between genes, even when Mutation Type is set to NT. These mutations can be important. For example,...
GISAID ingest steps are pushing 100 GB of RAM... probably because we're loading the entire metadata set into memory before saving it to disk. Solution: - Each 100K sequences, flush...
MOBILE REDESIGN Scope of this project: Redesign the home page for phones - We won't use media queries, responsive CSS, etc. Make a totally separate mobile site (can still share...
The top vega plot in the home tab breaks when entering the home tab from another page. The plot recovers on refresh.
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A COVID-19 CoV Genetics (CG) browser to inform therapeutics development