covidcg

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old version mutations files (History of all the NT and AA files list created by COVID CG)

1

Hi, I was wondering if there is a repository containing all the versions of the files that can be downloaded from COVID CG. Now, the version 2.5.1-beta1 9907198 sequences (up...

carlottaolivero

The custom coordinates mode is currently being adapted in the Flu version to accommodate segment information (this is not relevant in the SARS2 and RSV sites where only one segment...

atc3

Instead of doing strict thresholding at the beginning of our workflow, track the N%age for each sequence and allow users to filter on quality from the frontend

atc3

RSV: structural viewer pulldown for the post-fusion PDB ID

2

Dave wants a pulldown for the post-fusion PDB ID

chan-solo

Includes frontend and data pipeline updates.

a13xk13m

Add Growth Rate

1

Do this once linear interpolation is finished? - [ ] Compute growth rate in the store/util function, as a slope from the start -> end of the date range -...

atc3

Filter SNVs by substitution, insertion, deletion

1

Maybe put under the "Group by SNV" radio button?

atc3

I think it's time to implement this...

atc3

> For example if I want to select AA 41, 49, 54, I don't seem to be able to do that by using 41;49;54 without it giving an error, but...

atc3

Add to the header here, for quicker searching of lineages 

atc3