diann-rpackage

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When you have a single column data frame, the result of `piv[order(rownames(piv)), ]` is actually a numeric vector. When a data frame with only one column is subsetted, R will...

npinter

Phophopeptide quantification

1

Hello, Thanks for the great package. I have a phosphopeptide enrichment dataset. I am wondering how I can convert the diann_output.tsv to a table of phosphosites and their associated intensities....

cutleraging

Very different results compared to diann::diann_maxlfq results

3

Dear Vadim, As the manual to DIA-NN suggests, we are recommended to use `iq` to obtain MaxLFQ intensities as an alternative to diann-r. However, if I run the same example...

Mengbo-Li

maxLFQ: diann-r versus diann-cpp

1

Dear Vadim, thank you for developing diann. We think it is awesome and use it a lot :) Recently, we started having a look also at the diann-r package. We...

bhagwataditya

Is there any way to get Protein Names and Gene Names along with the Protein.Group ID?

6

Hi Dr. Vdemichev, I was able to analyze the DIA-NN output using your R package. However, it only contains the Uniprot ID and correspondence value for each sample. I also...

Saleh-AU

Error downloading R package

1

I'm using the instructions provided but I'm getting this error. Any help would be appreciated! Downloading GitHub repo vdemichev/diann-rpackage@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, :...

ttessie2