DiaNN

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DIA NN 1.19.1 problems

1

When I used the 1.19.1 version, there is a contaminant option, when I choose it, the contaminants were not added to the search. Altrhough I saw you have a database...

haiyan-MS

Separate Library generation vs all in one.

3

Hello! I am running DiaNN 1.8 on Windows and I noticed something odd, and I was wondering if there was an explanation for it. I basically have two runs. All...

jsnedeco

Proteotypic peptides

2

Dear Vadim, I analysed thermo raw files with DIA-NN 1.8.1 and 1.9. I matched the generated pg_matrix and pr_matrix to find the number of proteotypic peptides for each reported protein...

SiProt

Visualize XIC in skyline without unimod modifications

1

Hello DiaNN team, I have been using DiaNN to analyze histone modifications. The peptides we are analyzing are first derivatized using propionic anhydride, so many of the modifications are combinations...

cutleraging

Question about Fragment Intensities

6

Hello, Thank you for developing DIA-NN. I am new to DIA-NN and mass spec in general. I am currently trying to use DIA-NN to extract fragment level data and have...

SahilCh95

SQLite exception on Linux

2

Hi, I am running DIA-NN (1.8.2_beta_8 and 1.9.1) on Linux and have been experiencing the following error (slurm output): terminate called after throwing an instance of 'CppSQLite3Exception' This seems to...

GolAGitHub

how to introduce a new modification and specify its delta mass

2

Dear DIA-NN, Thanks for developing such a wonderful software! Your work is highly appreciated! I have a question: Would it be possible to customize a modification and insert its delta...

gmaddalo79

DIANN_v1.9.1_only first search report, no final pg_report

7

Dear Vadim, For my ongoing study, I have been using the HPC cluster (Linux) to quantify my data with DIANN1.9.1. I transferred the script generated from the Windows interface, but...

PsuperGirl

Only speclib file, but not tsv file is generated as the Spectral library

7

Hi, Thank you so much for creating DIA-NN. I am new to this tool. I was trying to generate a predicted spectral library from a FASTA file. According to the...

TeckYewLow

How to understand PG.Q.Value in result file

1

Hi Dr. Vdemichev, Recently I used diann report.tsv for downstream analysis by diann-rpackage, after ` protein.groups

Gambrian