DiaNN
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vdemichev
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
I am interested in the meaning of the `Evidence` column in report.tsv (connected with #1068 and #1138) @vdemichev can you shed some light on what exactly it represents? Thanks!
Hi Vadim, I have been using Dia-NN through FragPipe to analyze custom PTMs (one is in UniMod but the other is not). I managed to run it but PTMProphet has...
Wondering what is the recommended way to generate library from DDA for DIA-NN search? For example i have MaxQuant msms.txt file but not sure how to present it as speclib...
Hi Vadim and team, I have generated a spectral library in skyline which I have exported as a report to be used in DIAnn. The reason for doing this is...
Hi Vadim, I am a little curious in knowing how to derive the phospho site tables from the main DIA-NN report? Which columns and respective filters would I need to...
Can I create a hybrid library from fasta digest and dda library? the dda library was created by fragpipe using fractionation dda data。 
Since the target cluster is running Centos 7, the binary files will not work (requiring newer libraries). How does one build DiaNN 1.9.1 from source? The source tarball doesn't appear...
We have a dataset with two groups that have empty results files when opening the report.tsv, and we think it may be because the linear classifer was used. Is there...
Hii!! So, I had a couple of times to repeat my data processing for a few runs and it was different each single time? They were the same files processed...
Hi, I want to analyze LFQ-DIA global proteome and phospho-enriched proteome data separately on DIA-NN. Just want to make sure that we need two different libraries for these two different...
