Pulling out information from Spectral Library created from fasta file

[kwynne71]

Hi, Can can I pull out m/z, retention time, charge, ion mobility and protein accession/name from a spectral phospho library created from the reviewed human uniprot database. Best Kieran

[vdemichev]

Hi Kieran,

Yes, for this you need to convert the library to .tsv using DIA-NN. But the output file could be very large. Alternatively, for identified peptides can just use the main report generated with --report-lib-info.

Best, Vadim

[kwynne71]

Thank's Vadim

On Fri 22 Mar 2024, 18:31 Vadim Demichev, @.***> wrote:

Hi Kieran,

Yes, for this you need to convert the library to .tsv using DIA-NN. But the output file could be very large. Alternatively, for identified peptides can just use the main report generated with --report-lib-info.

Best, Vadim

— Reply to this email directly, view it on GitHub https://github.com/vdemichev/DiaNN/issues/969#issuecomment-2015681405, or unsubscribe https://github.com/notifications/unsubscribe-auth/AUPV2DTXBRNDIZQDNUIVFBTYZR2HZAVCNFSM6AAAAABEYDLF7GVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMJVGY4DCNBQGU . You are receiving this because you authored the thread.Message ID: @.***>