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bugs in Command-line running on sever

Open lzy604 opened this issue 2 years ago • 1 comments

I test one sample on the sever, by using command-line diann --f ../20210208_KLOF_DIA_FAIMS_35V_d0_1.mzML --lib --threads 24 --verbose 1 --out ./report.tsv --qvalue 0.01 --matrices --out-lib ./report-lib.tsv --gen-spec-lib --predictor --fasta ../uniprot-proteome_Human_UP000005640_20191105.fasta --fasta-search --min-fr-mz 200 --max-fr-mz 2000 --met-excision --cut K*,R* --missed-cleavages 2 --min-pep-len 7 --max-pep-len 52 --min-pr-mz 300 --max-pr-mz 1800 --min-pr-charge 1 --max-pr-charge 4 --unimod4 --var-mods 5 --var-mod UniMod:35,15.994915,M --var-mod UniMod:1,42.010565,*n --monitor-mod UniMod:1 --reanalyse --relaxed-prot-inf --smart-profiling --peak-center --no-ifs-removal

but it showed this problem: Loading FASTA ../uniprot-proteome_Human_UP000005640_20191105.fasta /usr/local/apps/diann/1.8.1/bin/diann: line 13: 25309 Killed singularit y exec --cleanenv "${selfdir}/libexec/${sif_file}" "$cmd" "$@"

lzy604 avatar Aug 30 '22 20:08 lzy604

Try re-downloading canonical non-compressed FASTA from uniprot?

Vadim

vdemichev avatar Sep 05 '22 10:09 vdemichev