KING 2.2.4

[Yomiran]

Hi!

I'm trying to perform IBD analysis on my ddRAD-seq data. When I'm running this command:

king -b Urban_Rural_3th.bed --fam Urban_Rural_3th.fam --bim Urban_Rural_3th.bim --related

I'm getting this fatal error:

KING starts at Sun Sep 20 14:07:13 2020 Loading genotype data in PLINK binary format... Read in PLINK fam file Urban_Rural_3th.fam... PLINK pedigrees loaded: 182 samples Read in PLINK bim file Urban_Rural_3th.bim... Genotype data consist of 0 autosome SNPs 33323 other SNPs are removed. PLINK maps loaded: 0 SNPs

FATAL ERROR - No autosome SNPs are available. Please check your map file.

I'm trying to work on the data that I got from stacks using plink 1.9 - but I'm unable to make it run. Please help! Best, Yomiran

[BoPeng]

I am not an KING expert and do not know what is going on here? DId you contact the author of KING?