sos-notebook
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vatlab
Multi-language Jupyter Notebook
Sitting in SciPy2019 watching a demonstration using JupyterLab + a Python notebook and a C++ notebook with [Voila](https://github.com/QuantStack/voila). It would be interesting to see if a SoS Notebook can be...
Work with cluster using a jupyterhub system on jupyterhub. Use code in notebook to create jobs. Our approach is different in that it tries to separate detailed configuration from the...
We currently use [pexpect](https://github.com/vatlab/SoS/blob/9de2870f82adb8e2ad7e8cdf8a46b93f186f2fcb/src/sos/utils.py#L1499) to execute command under windows but this function does not support built-in shell commands such as `dir` and `echo`. It might work if users installed *nix...
In case of two cells with kernels, ``` sos R ``` if I split the `R` cell, the top cell would inherit the kernel from the `sos` (because it is...
I have not yet found an example where a step produces usable non-file target. We have * `executable`, possible, but even if we can generate an executable in a step,...
The following patch load mode only when they are needed. It is supposed to work but somehow does not. ``` diff --git a/src/sos_notebook/kernel.js b/src/sos_notebook/kernel.js index e5d340c..5b7165a 100644 --- a/src/sos_notebook/kernel.js +++...
Our notebook, particularly when containing long scripts, can be [a bit ugly](https://github.com/stephenslab/gtexresults/blob/master/workflows/fastqtl_to_mash.ipynb). Even though those with [shorter scripts](https://github.com/TADA-A/TADA-A/blob/master/external_tools/mutation_annotation_pipeline.ipynb) are fine. But other notebooks on github seems to show better: https://github.com/geekypete/Genomic-Prediction/blob/master/GenomicPrediction.ipynb...
Scala should in my opinion be the next language to support (after Ruby) because it has a Java root, which allows us to work with other Java flavored languages/kernels such...
I came across a case when a notebook is running and I open it from another host, I cannot click any of the buttons because the `onclick` stuff is removed...