Vassilis Virvilis
Vassilis Virvilis
@matentzn some help on this please. I am trying to follow @shawntanzk suggestion and add an exclusion clause for when the synonym is EXACT ABBREVATION However I don't know how...
Thanks a lot. This seems to work. Now I have to make it work for my check. BTW, UBERON:8440028 PHY is an abbreviation and It was in #2643 that was...
I fixed the query and now it does not flag ABBREVIATION synonyms as errors but I managed to botch the git history. So If you don't want to merge I...
I accidentally closed my PR and cannot get it back. Sorry everybody. New PR is #2681
Not sure if this what you suggested. I added ABBREVIATION to "PHY" (UBERON:8440028 with name: "Perihypoglossal nuclei"). There are many options there i.e. convert both conflicting terms to RELATED ABBREVIATION,...
Can't commit your suggestion from github interface so I added it to the PR
Hi @matentzn and everybody else. I would like your advice if possible. I have created (retrofitted actually) a perl script that checks an OBO ontology for polysemy issues. Here is...
I am not familiar with SPARQL (that will not be a problem though) but the link you sent looks like exactly what I am trying to accomplish (maybe in a...
Thanks a lot @matentzn That covers a lot of ground. I managed to run it and everything comes out nicely. The existing checks cover the 99% of the cases. Here...
This is fun! Thanks a lot. 1. **duplicate_label_synonym** sort of works. It issues a warning alright which is correct if the label/synonym are in the same Term (id). In that...