error when running extract on .hic files

[ZQY19960810]

Dear chesser: Hi, I was using two hic matrices (generated from juicer in resolution 10000, chromosome was all, when I trying to use chess extract command but shows following error. Do you know the possible reason? Thank you for your answer Here is the CHESS scripts I hve used: chess extract Sscrofa11_200kb_win_40kb_step.bed SAMN15870120.hic@10kb SAMN09691005.hic@10kb ./features

Here is the CHESS error message for the command I have used: _2022-05-26 21:27:13,658 INFO Running '/home/zhaoqianyi/miniconda3/envs/hicex3.6/bin/chess extract Sscrofa11_200kb_win_40kb_step.bed SAMN15870120.hic@10kb SAMN09691005.hic@10kb ./features' 2022-05-26 21:27:23,521 INFO CHESS version: 0.3.7 2022-05-26 21:27:23,521 INFO FAN-C version: 0.9.23 2022-05-26 21:27:23,525 INFO Loading reference contact data 2022-05-26 22:14:55,429 INFO Loading region pairs 2022-05-26 22:14:55,736 INFO Applying image filtering to identify specific structures Traceback (most recent call last): File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/bin/chess", line 585, in Chess() File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/bin/chess", line 75, in init getattr(self, args.command)([sys.argv[0]] + sys.argv[option_ix:]) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/bin/chess", line 567, in extract args.closing_square) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/chess/get_structures.py", line 148, in extract_structures filter1 = filters.threshold_otsu(filter_positive, nbins=size) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/skimage/filters/thresholding.py", line 364, in threshold_otsu counts, bin_centers = _validate_image_histogram(image, hist, nbins) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/skimage/filters/thresholding.py", line 307, in _validate_image_histogram image.ravel(), nbins, source_range='image', normalize=normalize File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/skimage/_shared/utils.py", line 338, in fixed_func return func(*args, **kwargs) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 266, in histogram hist, bin_centers = _histogram(image, nbins, source_range, normalize) File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 300, in histogram hist, bin_edges = np.histogram(image, bins=bins, range=hist_range) File "<array_function internals>", line 6, in histogram File "/home/zhaoqianyi/miniconda3/envs/hicex3.6/lib/python3.7/site-packages/numpy/lib/histograms.py", line 857, in hi stogram decrement = tmp_a < bin_edges[indices] IndexError: index -9223372036854775808 is out of bounds for axis 0 with size 21