vincentappiah

icon indicating a website link https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ

icon location I write tutorials on data science and bioinformatics. If you want to support me, you can buy me coffee: https://www.buymeacoffee.com/informatician

Results 27 comments of vincentappiah

Accessions not found in local database

Dear Developers, This is to let you know, I am experiencing a similar problem. I am using Krona 2.8.1 and below is the message I got [ WARNING ] The...

I followed your guidance on the installation of channels and yaml, but the error was reported at this step. The error was as follows: Is there any solution? Thank you very much

I have modified the scripts. Please redownload them and try again.

Kraken-translate error

I have a similar issue. It happened a day after downloading and settup of the kraken database. I used the script giving here https://github.com/sejmodha/MiscScripts/blob/master/UpdateKrakenDatabases.py

Can prokka annotate only from --protein file?

Hi @Zazgah Did you come up with any solution? I have a similar task to do as well.

Can prokka annotate only from --protein file?

Thanks. I will go with this strategy as well. Regards, Vincent

KeyError: 'antismash_generation'

Hello @nextgenusfs I have a similar issue. Perhaps if you can give the exact antismash command being used by funnannotate, then we can run that using a locally installed one.

LibMambaUnsatisfiableError: Encountered problems while solving

Hi @bluefox18010139 It appears the software version for macos is unavailable in conda. Here are some possible workarounds. 1. You may have to use other package managers like brew to...

LibMambaUnsatisfiableError: Encountered problems while solving

I have some tutorials on conda which can help you setup your linux system. Here are the links [https://www.youtube.com/playlist?list=PLe1-kjuYBZ070ZEjX3MulaMGcQPhU8KQY](https://www.youtube.com/playlist?list=PLe1-kjuYBZ06_3nYAYFqvyoSUhMZSXiGu) [https://www.youtube.com/playlist?list=PLe1-kjuYBZ070ZEjX3MulaMGcQPhU8KQY](https://www.youtube.com/playlist?list=PLe1-kjuYBZ070ZEjX3MulaMGcQPhU8KQY)

Scaffold longer than reference genome due to NNNNs

Dear @shivanshss, Thanks for the information. I will draw the dot plot. For the query sequence do you mean the one I generated after running ragtag or the assembly fasta...

installation issues

Hi @pati-ni Here is the build log g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include...