Use GitHub pages for documentation

[valentinitnelav]

The current https://rawgit.com/ is not in service anymore. It as actually surprising that the documentation links are still supported. Switch to using GitHub pages as soon as possible.

[technocrat]

> devtools::install_github("valentinitnelav/plotbiomes")
Using github PAT from envvar GITHUB_TOKEN
Error: Failed to install 'unknown package' from GitHub:
  HTTP error 401.
  Bad credentials

  Rate limit remaining: 56/60
  Rate limit reset at: 2021-10-06 23:56:59 UTC

Anything to be done other than cloning?

[valentinitnelav]

Hi @technocrat

Is your comment related to the documentation on rawgit (title of the issue here) or do you have issues with installing the package? I check the installation (though I didn't use it in a long time) and still works for me. I can't reproduce your error.

> devtools::install_github("valentinitnelav/plotbiomes")
Downloading GitHub repo valentinitnelav/plotbiomes@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

 1: All                                 
 2: CRAN packages only                  
 3: None                                
 4: cpp11      (0.3.1  -> 0.4.0 ) [CRAN]
 5: mime       (0.11   -> 0.12  ) [CRAN]
 6: digest     (0.6.27 -> 0.6.28) [CRAN]
 7: sf         (1.0-2  -> 1.0-3 ) [CRAN]
 8: pillar     (1.6.2  -> 1.6.3 ) [CRAN]
 9: lifecycle  (1.0.0  -> 1.0.1 ) [CRAN]
10: satellite  (1.0.2  -> 1.0.3 ) [CRAN]
11: data.table (1.14.0 -> 1.14.2) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3
✓  checking for file ‘/tmp/RtmpRs3i7t/remotes28c6c5a7f38a1/valentinitnelav-plotbiomes-87cf718/DESCRIPTION’ ...
─  preparing ‘plotbiomes’:
✓  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘plotbiomes_0.0.0.9001.tar.gz’
   Warning in sprintf(gettext(fmt, domain = domain), ...) :
     one argument not used by format 'invalid uid value replaced by that for user 'nobody''
   Warning: invalid uid value replaced by that for user 'nobody'
   Warning in sprintf(gettext(fmt, domain = domain), ...) :
     one argument not used by format 'invalid gid value replaced by that for user 'nobody''
   Warning: invalid gid value replaced by that for user 'nobody'
   
Installing package into ‘/home/vs66tavy/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
* installing *source* package ‘plotbiomes’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plotbiomes)
> whittaker_base_plot()
Error in whittaker_base_plot() : 
  could not find function "whittaker_base_plot"
> library(plotbiomes)
     Happy biome plotting!

[technocrat]

Hi. Sorry, it's an install issue; I picked this rather than a new issue because it seems to be related. Here's what I get

devtools::install_github("valentinitnelav/plotbiomes")
#> Using github PAT from envvar GITHUB_TOKEN
#> Error: Failed to install 'unknown package' from GitHub:
#>   HTTP error 401.
#>   Bad credentials
#> 
#>   Rate limit remaining: 59/60
#>   Rate limit reset at: 2021-10-07 22:47:07 UTC
#> 
#> 

^{Created on 2021-10-07 by the reprex package (v2.0.1)}

I'm guessing that the difference is that I don't have a token (other than my usual ssh credential) to offer, but you do. I'm on a well-updated Ubuntu system with current releases of everything relevant, I think.