vaex
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Published
20 hours ago •
vaexio
vaexio
[FEATURE-REQUEST] Support Python 3.11.2
Hey, I was wondering what makes vaex fail to install on Python 3.11.2
Building wheel for vaex-core (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for vaex-core (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [501 lines of output]
<string>:4: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-12.5-x86_64-cpython-311
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/scopes.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/geo.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/serialize.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/functions.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/logging.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/misc_cmdline.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/promise.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/expresso.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/execution.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/grids.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/tasks.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/config.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/version.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/encoding.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/benchmark.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/legacy.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataset_mmap.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/datatype_test.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/memory.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/_version.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/registry.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/samp.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/events.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataframe.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/convert.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/asyncio.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/cpu.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/cache.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataset_utils.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/formatting.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/selections.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/export.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/join.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/docstrings.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/rolling.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataset.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/hash.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/shift.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/delayed.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataframe_protocol.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/utils.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/kld.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/stat.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/csv.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/parallelize.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/settings.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/datatype.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/metal.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/progress.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/array_types.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/agg.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/groupby.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/expression.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/json.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/dataset_misc.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/image.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/__main__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/multiprocessing.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/strings.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/column.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/struct.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/schema.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/multithreading.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/itertools.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/meta.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/utils_test.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/_version.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/opener.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/convert.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/dataset.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/utils.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
copying vaex/arrow/numpy_dispatch.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/arrow
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/core
copying vaex/core/_version.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/core
copying vaex/core/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/core
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/s3arrow.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/gcs.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/asyncio.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/cache.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/s3fs.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/s3_test.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/s3.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
copying vaex/file/column.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/file
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/misc.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/expresso.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/plot.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/ui.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/all.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/dataset.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/__main__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
copying vaex/test/cmodule.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/ipyvolume.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/jprops.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/readcol.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/common.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
copying vaex/ext/bokeh.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/ext
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/ordereddict.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/samp.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/expressions.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/pandawrap.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/progressbar.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
copying vaex/misc/parallelize.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/misc
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/datasets
copying vaex/datasets/__init__.py -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/datasets
running egg_info
writing vaex_core.egg-info/PKG-INFO
writing dependency_links to vaex_core.egg-info/dependency_links.txt
writing entry points to vaex_core.egg-info/entry_points.txt
writing requirements to vaex_core.egg-info/requires.txt
writing top-level names to vaex_core.egg-info/top_level.txt
reading manifest file 'vaex_core.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'vendor'
warning: no files found matching '*.h' under directory 'src'
warning: no files found matching '*.c' under directory 'src'
adding license file 'LICENSE.txt'
writing manifest file 'vaex_core.egg-info/SOURCES.txt'
/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vaex.test.files' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'vaex.test.files' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'vaex.test.files' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'vaex.test.files' to be distributed and are
already explicitly excluding 'vaex.test.files' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
copying vaex/pcre.dll -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/pcrecpp.dll -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
copying vaex/vcruntime140_1.dll -> build/lib.macosx-12.5-x86_64-cpython-311/vaex
creating build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/gaia-small-colfits-basic.fits -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/gaia-small-fits-basic.fits -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/gaia-small-colfits-plus.fits -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/gaia-small-fits-plus.fits -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/gaia-small-votable.vot -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/test/files/default_amuse_plummer.hdf5 -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/test/files
copying vaex/datasets/iris.hdf5 -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/datasets
copying vaex/datasets/titanic.hdf5 -> build/lib.macosx-12.5-x86_64-cpython-311/vaex/datasets
running build_ext
building 'vaex.vaexfast' extension
creating build/temp.macosx-12.5-x86_64-cpython-311
creating build/temp.macosx-12.5-x86_64-cpython-311/src
clang -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include -I/Users/franz/.pyenv/versions/3.11.2/include/python3.11 -c src/vaexfast.cpp -o build/temp.macosx-12.5-x86_64-cpython-311/src/vaexfast.o -std=c++11 -O3 -funroll-loops -Werror=return-type -Wno-unused-parameter -g -mmacosx-version-min=10.9
In file included from src/vaexfast.cpp:31:
In file included from /private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948:
/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
src/vaexfast.cpp:743:2: warning: '/*' within block comment [-Wcomment]
/**/
^
src/vaexfast.cpp:665:12: warning: unused variable 'i_x' [-Wunused-variable]
long long i_x = offset_x;
^
src/vaexfast.cpp:666:12: warning: unused variable 'i_y' [-Wunused-variable]
long long i_y = offset_y;
^
4 warnings generated.
clang++ -bundle -undefined dynamic_lookup -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/Users/franz/.pyenv/versions/3.11.2/lib -Wl,-rpath,/Users/franz/.pyenv/versions/3.11.2/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/Users/franz/.pyenv/versions/3.11.2/lib -Wl,-rpath,/Users/franz/.pyenv/versions/3.11.2/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib build/temp.macosx-12.5-x86_64-cpython-311/src/vaexfast.o -L/Users/franz/.pyenv/versions/3.11.2/lib -o build/lib.macosx-12.5-x86_64-cpython-311/vaex/vaexfast.cpython-311-darwin.so
building 'vaex.superstrings' extension
clang -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include -Ivendor/pybind11/include -Ivendor/pybind11/include -Ivendor/string-view-lite/include -Ivendor/boost -I/Users/franz/.pyenv/versions/3.11.2/include -I/Users/franz/.pyenv/versions/3.11.2/Library/include -I/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-install-jmyl0ajg/vaex-core_1fde4995c5534df5b6d81a87468ebc0f/vendor/pcre/Library/include -I/Users/franz/.pyenv/versions/3.11.2/include/python3.11 -c src/string_utils.cpp -o build/temp.macosx-12.5-x86_64-cpython-311/src/string_utils.o -std=c++11 -O3 -funroll-loops -Werror=return-type -Wno-unused-parameter -g -mmacosx-version-min=10.9
clang -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-build-env-my16up7p/overlay/lib/python3.11/site-packages/numpy/core/include -Ivendor/pybind11/include -Ivendor/pybind11/include -Ivendor/string-view-lite/include -Ivendor/boost -I/Users/franz/.pyenv/versions/3.11.2/include -I/Users/franz/.pyenv/versions/3.11.2/Library/include -I/private/var/folders/ph/kl0lzzgd7rj651qtlhdqy17m0000gn/T/pip-install-jmyl0ajg/vaex-core_1fde4995c5534df5b6d81a87468ebc0f/vendor/pcre/Library/include -I/Users/franz/.pyenv/versions/3.11.2/include/python3.11 -c src/strings.cpp -o build/temp.macosx-12.5-x86_64-cpython-311/src/strings.o -std=c++11 -O3 -funroll-loops -Werror=return-type -Wno-unused-parameter -g -mmacosx-version-min=10.9
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
In file included from vendor/pybind11/include/pybind11/cast.h:16:
vendor/pybind11/include/pybind11/detail/internals.h:200:9: warning: 'PyEval_InitThreads' is deprecated [-Wdeprecated-declarations]
PyEval_InitThreads();
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/ceval.h:132:1: note: 'PyEval_InitThreads' has been explicitly marked deprecated here
Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pyport.h:336:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
vendor/pybind11/include/pybind11/cast.h:442:36: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
" " + handle(frame->f_code->co_filename).cast<std::string>() +
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
vendor/pybind11/include/pybind11/cast.h:444:29: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
handle(frame->f_code->co_name).cast<std::string>() + "\n";
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
vendor/pybind11/include/pybind11/cast.h:445:26: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
frame = frame->f_back;
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:2021:49: error: no member named 'frame' in '_ts'
PyFrameObject *frame = PyThreadState_Get()->frame;
~~~~~~~~~~~~~~~~~~~ ^
vendor/pybind11/include/pybind11/pybind11.h:2022:41: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
if (frame && (std::string) str(frame->f_code->co_name) == name &&
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:2023:14: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
frame->f_code->co_argcount > 0) {
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:2026:18: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0));
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:2026:52: error: member access into incomplete type 'PyFrameObject' (aka '_frame')
frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0));
^
/Users/franz/.pyenv/versions/3.11.2/include/python3.11/pytypedefs.h:22:16: note: forward declaration of '_frame'
typedef struct _frame PyFrameObject;
^
src/strings.cpp:278:27: warning: comparison of integers of different signs: 'int64_t' (aka 'long long') and 'const size_t' (aka 'const unsigned long') [-Wsign-compare]
if ((i < 0) || (i > length)) {
~ ^ ~~~~~~
src/strings.cpp:287:27: warning: comparison of integers of different signs: 'int64_t' (aka 'long long') and 'const size_t' (aka 'const unsigned long') [-Wsign-compare]
if ((i < 0) || (i > length)) {
~ ^ ~~~~~~
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:838:18: warning: variable 'has_null' set but not used [-Wunused-but-set-variable]
bool has_null = false;
^
In file included from src/strings.cpp:6:
src/superstring.hpp:500:173: warning: field '_own_null_bitmap' will be initialized after field 'indices_length' [-Wreorder-ctor]
: StringSequenceBase(string_count, null_bitmap, null_offset), bytes(0), byte_length(byte_length), indices(0), offset(offset), _own_bytes(true), _own_indices(true), _own_null_bitmap(false), indices_length(length+1) {
~~~~~~~~~~ ~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~
indices_length(length+1) indices(0) offset(offset _own_bytes(true _own_indices(true _own_null_bitmap(false
src/superstring.hpp:865:28: note: in instantiation of member function 'StringList<int>::StringList' requested here
StringList *list = new StringList(_this->byte_size(), _this->length, 0, _this->null_bitmap, _this->null_offset);
^
src/superstring.hpp:890:16: note: in instantiation of function template specialization '_apply_seq<StringList<int>, stripper>' requested here
return _apply_seq<StringList32, W>(_this, word_transform);
^
src/superstring.hpp:1092:76: note: in instantiation of function template specialization '_apply_seq<stripper>' requested here
StringSequenceBase *StringSequenceBase::lstrip(std::string chars) { return _apply_seq<>(this, stripper(chars, true, false)); }
^
src/superstring.hpp:500:173: warning: field '_own_null_bitmap' will be initialized after field 'indices_length' [-Wreorder-ctor]
: StringSequenceBase(string_count, null_bitmap, null_offset), bytes(0), byte_length(byte_length), indices(0), offset(offset), _own_bytes(true), _own_indices(true), _own_null_bitmap(false), indices_length(length+1) {
~~~~~~~~~~ ~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~
indices_length(length+1) indices(0) offset(offset _own_bytes(true _own_indices(true _own_null_bitmap(false
src/superstring.hpp:1161:28: note: in instantiation of member function 'StringList<long long>::StringList' requested here
StringList64 *sl = new StringList64(byte_size(), length);
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:730:65: note: in instantiation of function template specialization 'pybind11::class_<StringSequence, std::shared_ptr<StringSequence>>::class_<>' requested here
py::class_<StringSequence, std::shared_ptr<StringSequence>> string_sequence(m, "StringSequence");
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:731:73: note: in instantiation of function template specialization 'pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>::class_<pybind11::class_<StringSequence, std::shared_ptr<StringSequence>>>' requested here
py::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>> string_sequence_base(m, "StringSequenceBase", string_sequence);
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:797:5: note: in instantiation of function template specialization 'pybind11::class_<StringListList>::class_<>' requested here
py::class_<StringListList>(m, "StringListList")
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:529:5: note: in instantiation of function template specialization 'pybind11::class_<StringList<int>, std::shared_ptr<StringList<int>>>::class_<pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>>' requested here
py::class_<StringList, std::shared_ptr<StringList>>(m, class_name, base)
^
src/strings.cpp:804:5: note: in instantiation of function template specialization 'add_string_list<StringList<int>, pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>, pybind11::module>' requested here
add_string_list<StringList32>(m, string_sequence_base, "StringList32");
^
In file included from src/strings.cpp:6:
src/superstring.hpp:493:11: warning: field '_own_null_bitmap' will be initialized after field 'indices_length' [-Wreorder-ctor]
_own_null_bitmap(false), indices_length(length+1) {}
^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~
_own_indices(false _own_null_bitmap(false
src/strings.cpp:539:29: note: in instantiation of member function 'StringList<int>::StringList' requested here
return new StringList((char *)bytes_info.ptr, bytes_info.shape[0], (typename StringList::index_type *)indices_info.ptr, string_count, offset);
^
src/strings.cpp:804:5: note: in instantiation of function template specialization 'add_string_list<StringList<int>, pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>, pybind11::module>' requested here
add_string_list<StringList32>(m, string_sequence_base, "StringList32");
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:529:5: note: in instantiation of function template specialization 'pybind11::class_<StringList<long long>, std::shared_ptr<StringList<long long>>>::class_<pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>>' requested here
py::class_<StringList, std::shared_ptr<StringList>>(m, class_name, base)
^
src/strings.cpp:805:5: note: in instantiation of function template specialization 'add_string_list<StringList<long long>, pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>, pybind11::module>' requested here
add_string_list<StringList64>(m, string_sequence_base, "StringList64");
^
In file included from src/strings.cpp:6:
src/superstring.hpp:493:11: warning: field '_own_null_bitmap' will be initialized after field 'indices_length' [-Wreorder-ctor]
_own_null_bitmap(false), indices_length(length+1) {}
^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~
_own_indices(false _own_null_bitmap(false
src/strings.cpp:539:29: note: in instantiation of member function 'StringList<long long>::StringList' requested here
return new StringList((char *)bytes_info.ptr, bytes_info.shape[0], (typename StringList::index_type *)indices_info.ptr, string_count, offset);
^
src/strings.cpp:805:5: note: in instantiation of function template specialization 'add_string_list<StringList<long long>, pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>, pybind11::module>' requested here
add_string_list<StringList64>(m, string_sequence_base, "StringList64");
^
In file included from src/strings.cpp:6:
In file included from src/superstring.hpp:8:
In file included from vendor/pybind11/include/pybind11/numpy.h:12:
vendor/pybind11/include/pybind11/pybind11.h:1078:9: warning: expression result unused [-Wunused-value]
PYBIND11_EXPAND_SIDE_EFFECTS(add_base<options>(record));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/detail/common.h:651:47: note: expanded from macro 'PYBIND11_EXPAND_SIDE_EFFECTS'
#define PYBIND11_EXPAND_SIDE_EFFECTS(PATTERN) pybind11::detail::expand_side_effects{ ((PATTERN), void(), false)..., false }
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/strings.cpp:806:5: note: in instantiation of function template specialization 'pybind11::class_<StringArray, std::shared_ptr<StringArray>>::class_<pybind11::class_<StringSequenceBase, std::shared_ptr<StringSequenceBase>>>' requested here
py::class_<StringArray, std::shared_ptr<StringArray>>(m, "StringArray", string_sequence_base)
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:868:25: note: in instantiation of function template specialization 'to_string_mask<float>' requested here
m.def("to_string", &to_string_mask<float>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:869:25: note: in instantiation of function template specialization 'to_string_mask<double>' requested here
m.def("to_string", &to_string_mask<double>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:870:25: note: in instantiation of function template specialization 'to_string_mask<long long>' requested here
m.def("to_string", &to_string_mask<int64_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:871:25: note: in instantiation of function template specialization 'to_string_mask<int>' requested here
m.def("to_string", &to_string_mask<int32_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:872:25: note: in instantiation of function template specialization 'to_string_mask<short>' requested here
m.def("to_string", &to_string_mask<int16_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:873:25: note: in instantiation of function template specialization 'to_string_mask<signed char>' requested here
m.def("to_string", &to_string_mask<int8_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:874:25: note: in instantiation of function template specialization 'to_string_mask<unsigned long long>' requested here
m.def("to_string", &to_string_mask<uint64_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:875:25: note: in instantiation of function template specialization 'to_string_mask<unsigned int>' requested here
m.def("to_string", &to_string_mask<uint32_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:876:25: note: in instantiation of function template specialization 'to_string_mask<unsigned short>' requested here
m.def("to_string", &to_string_mask<uint16_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:877:25: note: in instantiation of function template specialization 'to_string_mask<unsigned char>' requested here
m.def("to_string", &to_string_mask<uint8_t>);
^
src/strings.cpp:636:24: warning: comparison of integers of different signs: 'pybind11::ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare]
if (info_mask.size != length) {
~~~~~~~~~~~~~~ ^ ~~~~~~
src/strings.cpp:878:25: note: in instantiation of function template specialization 'to_string_mask<bool>' requested here
m.def("to_string", &to_string_mask<bool>);
^
26 warnings and 8 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for vaex-core
Building wheel for future (pyproject.toml) ... done
Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492022 sha256=fa5b0bad4985dce2938da68c243faf97914862e88fe5a30f2995cca7481c44dc
Stored in directory: /Users/franz/Library/Caches/pip/wheels/da/19/ca/9d8c44cd311a955509d7e13da3f0bea42400c469ef825b580b
Building wheel for aplus (pyproject.toml) ... done
Created wheel for aplus: filename=aplus-0.11.0-py3-none-any.whl size=4366 sha256=9172fe615d21111d49ff4d5e75996b64589b1104021fa0c9460975705f8055d6
Stored in directory: /Users/franz/Library/Caches/pip/wheels/74/1c/74/052c2629ccf684eaf53e267e24052316d65242c3e02fb79a68
Successfully built future aplus
Failed to build vaex-core
ERROR: Could not build wheels for vaex-core, which is required to install pyproject.toml-based projects
It would be nice to have Python 3.11 support already, especially since 3.12 will be out in 5 months.
Currently, vaex does not support python 3.11, because it uses an outdated version of pybind.
The error member access into incomplete type 'PyFrameObject' originates from using an outdated versionof pybind, as explained here:
https://github.com/pybind/pybind11/discussions/4333
Updating the pybind dependency is not trivial, because, as is stated in the linked issue, some pybind fields were changed or removed entirely.
It's quite shocking I came here looking for Python 3.12 support, to see an issue about Python 3.11 support still open.
I created an issue for Python 3.12 support (#2397), and I hope that both are supported soon.
Looks like there already is a major effort (https://github.com/vaexio/vaex/pull/2331) to get Python 3.11 and 3.12 support on their way, and it's currently stuck on some CI files being lost (https://github.com/vaexio/vaex/pull/2331#issuecomment-1702344845).
I hope they find them of find another workaround, but depending on the development of the situation this might be become a nice bus_factor == 1 example.