Renato Alves

Seems like the binder setup is a little different from the one we have in-house and we end up with different URLs. My initial PR doesn't work on binder but...

If anyone bumps into this error and is lost about what to do, the solution is to navigate to the folder `.../ete3/ncbi_taxonomy/SQLite-Levenshtein/` and run `make`. If no error appears (i.e....

So if I actually just want to target `jugfile.function`, is there some syntax that provides this?

Every now and then I still trip on this. With `invalidate` it's quite an expensive and annoying mistake. Would you be open to changing the API to do exact matching...

@lh3 Thanks, increasing `-b` does seem to improve speed considerably. However I don't quite understand the impact of changing this option. At least during indexing, I don't see any significant...

So if I understand correctly, the ideal `-b` value is around `# of bases / 8`. Wouldn't it be possible to have this value adjusted automatically? From what I gather,...

From the tests I've been running, changing the `-b` value from the default of 10,000,000 to 500,000,000 to index a ~90Gb fasta file made the entire process roughly 6 times...

Would it make more sense to instead of redaction implement some kind of data encryption? Different users might have different opinions on what constitutes sensitive data... For instance with some...

So this follows what @albfan suggested above but simplifies the command-line interface by not requiring to manually specify the profile. For me it's not uncommon to have a single git...

Matrix to Mattermost threads are working but Mattermost to Matrix messages are posted off-thread. Does anyone know if additional configuration is required to have symmetric support for this feature or...