unito-bot

➤ Adam Novak commented: This might involve making the job run a sleep instead of the real command when you flip a switch on toil debug-job.

➤ Lon Blauvelt commented: Details should be added to this. Not entirely clear how this should be added. This is also low priority, as we recommend using CWL or WDL...

➤ Adam Novak commented: We do now send WDL task logs back to the leader when tasks run, so you can see your tasks' individual logs as evidence that they...

➤ Adam Novak commented: Maybe we want to replace the overwrites in chaining with a pointer field on the JobDescription? Or maybe we could change job store IDs from referring...

➤ Adam Novak commented: We want like a table of Toil exit codes and some explanation of negative exit codes and how they become large positive numbers sometimes. Also we...

➤ Adam Novak commented: We could also document exit codes and their signed/unsigned weirdness in general, for people who don’t know their Unix systems programming.

➤ Adam Novak commented: A lot of what one might do with this might be better done through WES, if you can have a WES server.

➤ Adam Novak commented: There might be some odd interactions between argcomplete and ConfigArgparse, and the way we will build and run the parser on things other than the command...

➤ Adam Novak commented: Another approach would be to store the workflow progress in CWL terms, and when restarting, not do a Toil-level restart but instead make CWL job orders...

➤ Adam Novak commented: A fix for this should also solve this problem for WDL. We might want to try and unify some of the interpreter code while we’re at...