error when running DCI gene expression tutorial

[7ehuang]

Hello, I am trying to run the tutorial for DCI for gene expression data: https://github.com/uhlerlab/causaldag/blob/master/docs/dci_tutorial.markdown

However, when I run d_dag = dci(X1, X2, alpha_ug = 0.001, alpha_skeleton=0.5, alpha_orient=0.001, max_set_size=3, verbose=1) as specified by the tutorial, I get NameError: name 'difference_ug' is not defined. Do you know what may be causing this error? I am using the same input files as the tutorial and installed DCI into my jupyter notebook using !pip install --user causaldag.

Thanks!

Best, Elaine

[axelalmet]

Hello,

I also get this error when I try to reproduce the DCI tutorial. I would love to be able to make use of this package, so any advice on fixing this would be greatly appreciated. Thank you!

Best wishes, Axel.

[limenglingll]

Hello, I am trying to run the tutorial for DCI for gene expression data: https://github.com/uhlerlab/causaldag/blob/master/docs/dci_tutorial.markdown

However, when I run d_dag = dci(X1, X2, alpha_ug = 0.001, alpha_skeleton=0.5, alpha_orient=0.001, max_set_size=3, verbose=1) as specified by the tutorial, I get NameError: name 'difference_ug' is not defined. Do you know what may be causing this error? I am using the same input files as the tutorial and installed DCI into my jupyter notebook using !pip install --user causaldag.

Thanks!

Best, Elaine

[qiuju-Zhang]

when I delete "verbose=1" or set "verbose=0", the error disappear!