Dieter Weber

Separate LiberTEM into sub-modules that can be installed and used individually

14

Discussion with @sk1p: Now that we are starting to integrate application modules, we should make sure these are properly packaged and can be installed separately from each other to preempt...

Creating a cupyx.scipy.sparse.{csr,csc}_matrix with dtype complex128 from dense drops purely imaginary values

1

### Description Purely imaginary values are dropped when constructing sparse matrices from dense. It only occurs with CSC and CSR, not COO, and only for complex128, not complex64. ### To...

Out of bounds memory access through manipulated input files?

1

As a specific example, the CSR format for sparse matrices contains a list of pointers into data and index arrays. An input file with manipulated indptr could be used to...

Constructing GCXS from non-canonical `scipy.sparse.csr_matrix` results in wrong results

5

**Describe the bug** GCXS seems to require a canonical CSR data structure, i.e. column indices sorted within a row and without duplicates. Slicing a GCXS array with non-canonical internal data...

Test notebook for cells with a semicolon

3

This notebook contains a cell where the output is suppressed with a semicolon. Nbval fails for this cell. The notebook was created with the most recent version of jupyter notebook....

Update license to GPL 3.0 or later

1

The current one maps to GPL 3 only. Closes #1553 List of valid license identifier string obtained by ``` import requests response = requests.get('https://sandbox.zenodo.org/api/licenses/?size=1000') print(response.json()) ``` ## Contributor Checklist: *...

Release planning for 0.14

10

We have quite a good set of changes in the current master, in particular fixing CoM descan error compensation for live processing, enabled by valid data masking, and supporting EMPAD...

Deprecate gridmatching and fullmatch

6

Depends on releasing https://github.com/LiberTEM/LiberTEM-blobfinder/pull/83, will fail and should not be merged until then. Closes #1469 The tests are removed, which allows removing the test fixtures and corresponding imports, which then...

Make sure DECTRIS compound HDF5 files work

7

Make sure https://er-c-data-mgmt.fz-juelich.de/browse/?path=/adhoc/arina_cryo4d_stem/maxleotest_master.h5 works in the web GUI without having to specify the dataset path. Also, we could consider adding hdf5plugin as a dependency and not only an extra since...

Reset link after opening files through URL?

1

Right now, the URL parameters to open a file persist even after the file was opened. That means the file is opened again if, for some reason, the page is...