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errors reported by axtchain

Open yeeus opened this issue 1 year ago • 0 comments

Describe the bug A clear and concise description of what the bug is.

NC_000005.10:110000000-120000000 is not in /path/to/GRCh38_noY.2bit

To Reproduce I followed the instruction on the website http://genomewiki.ucsc.edu/index.php/Same_species_lift_over_construction to liftover the annotations on GRCh38 to my genome assembly. This error was produced to by axtchain in the Step 2 - chain/net.

Expected behavior Finally get the chain file.

Best wishes!

yeeus avatar Feb 23 '24 07:02 yeeus