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Proposal to remove S:417/440/505 in branch specific mask list.

Open xz-keg opened this issue 1 year ago • 0 comments

New research shows position S:417/440/505 reversion may offer great immune escape under current immune background of repeated omicron infections. Those reversions may produce real growth advantages and we may be expected to see variants having those mutations.

Hence they shall be removed from branch-specific maskings of BA.2*, BA.2.75*, BA.5* and XBB* for better analysis.

However, given that lots of artefacts are still existing and twisting the tree, it is better if a filter to distinguish between real reversions and dropouts on a certain position be added.

xz-keg avatar May 04 '23 04:05 xz-keg