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Published 20 hours ago • verified publisher icon uci-cbcl

DNA sequences

Open diegocastano123 opened this issue 3 years ago • 3 comments

I have a fasta file with DNA sequences i.e (A, T, G, C) and when run Ufold doesnt work, why? My fasta file must be aligned?

diegocastano123 avatar May 31 '21 22:05 diegocastano123

Hi there,

Since our model is designed for predicting RNA sequences whose nucleotides are A,U,C,G (instead of A,T,C,G), so you may need to change your sequence to that accordingly.

Thanks

sperfu avatar Jun 01 '21 02:06 sperfu

Hi,

Please check the web server, because in spite of changing of T by U in my fasta sequences, Ufold doesn't want to work correctly. The results of my output are the same as my input.

Best,

diegocastano123 avatar Jun 02 '21 00:06 diegocastano123

Hi,

We have updated our web server, that should be work fine right now. Please take a look.

Thanks,

sperfu avatar Dec 07 '21 07:12 sperfu