UFold
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uci-cbcl
Hello, I know this is probably not a bug with the code but I was hoping someone here would know. I intend to run this on a M1 Mac and...
Hello, I am wondering if the training datasets used in the publication (RNAStralign, TR0, and fine-tuning dataset for bpRNA-new) are available? I was able to find the evaluation datasets from...
Hi, I am wandering why ss_label is a 600x3 matrix? I know that 600 is sequence length after cutting, and what the 3 columns represent? BTW, your work is awesome!
My version information is as below: cuDNN:8.5.0 cuda：11.7 pytorch=1.4.0 python=3.6.6 Ubuntu 20.04.4
Hello, I see you have BatchNorm2d layers, so the output of the model with change accordingly to the train() and eval() mode you use. I was wondering why you haven't...
I downloaded the data from the website, and put them into the folder. But when I tried to run python ufold_test.py --test_files TS2 This pops up. File "/miniconda3/envs/UFold/lib/python3.6/site-packages/munch/__init__.py", line 103,...
Hello, I am wondering if you have any function to pad batches with different size. Thank you so much in advance!
I've download the RNAStralign from the mxfold2, and it has 8 subfolders. With your code in process_data_newdataset.py, I just find the os.listdir(), and it can't solve the subfolders. So what...
/ufold/config.py use the config.test, but I can't find the test in the /ufold/config.json.
Hello, I'd like to ask how many epochs did you run to reach 90.5% F1-score on RNAStralign, and on other datasets? And did you adjust the learning rate while training?...
