uceleste

Thanks for the quick reply. As mentioned above, for duplications I performed the same process using haplotype2-chr1 as query and haplotype1-chr1 as reference (so inverting them). The results are reported...

Thanks for all this information! I'm happy to run the program again once you have made the necessary changes and I'll let you know the results of the dot plots....

Hi! I tested your new code for duplications using haplotype1-chr1 vs. haplotype2-chr1 and then I compared the result with the old one. The results are reported below. new mumandco_v3 haplotype1-chr1...