Tian Tian

Manifold spline regression

2

Hi, Is it possible to include the function that conducts spline regression in the Riemann manifold? I read a paper "Smoothing splines on Riemannian manifolds, with applications to 3D shape...

Hi, I am reading your code. In line 53 of utils.py, it says: `P = np.linalg.det(Sigma) ** -.5 ** (2 * np.pi) ** (-X.shape[1]/2.)` I guess it should be `P...

Opennconnect-gui crash on Mac after connect to a Jupiter connect

1

The problem is when I connect a Jupiter connect, it can connect but will crash after a few seconds. After the GUI crashed, the whole computer can't connect to the...

Number of inducing points in MEFISTO

1

It might be a naive question. MEFISTO use the Gaussian process (GP) to capture the dependency between samples in the data, and the rank of the covariance matrix in the...

DCC is described in https://github.com/shahsohil/DCC. Can I assume these two methods are the same? Thanks.

Question about the missingness in scATAC-seq data

1

Hi, It is just a naive idea. According to the paper, you describe that scATAC-seq has the issue of "missingness" like the dropout in scRNA-seq data. So what if using...

How to make ATAC counts as bins

4

Hi, I have a question of using scGPT on ATAC data. The typical scATAC-seq has binarized values 0 and 1, so how to make the ATAC counts as bins? Should...

Typos in the code

2

Hi, In the code file "SVGPVAE_model.py", should the line 913 be like `elbo = KL_term + lagrange_mult * (recon_loss/b + tf.stop_gradient(C_ma - recon_loss/b))`? Also the line 925, should it be...