tskit Ls missingness

Missingness added to forwards-backwards diploid LiS testing

Added missingness, by including an emission probability of 1 for all missing characters in the query sequence.

Sep 23 '22 15:09 astheeggeggs

Codecov Report

Merging #2515 (979e14d) into main (93cd81f) will not change coverage. The diff coverage is n/a.

:exclamation: Current head 979e14d differs from pull request most recent head 4926a25. Consider uploading reports for the commit 4926a25 to get more accurate results

@@           Coverage Diff           @@
##             main    #2515   +/-   ##
=======================================
  Coverage   89.83%   89.83%           
=======================================
  Files          30       30           
  Lines       28624    28624           
  Branches     5590     5590           
=======================================
  Hits        25713    25713           
  Misses       1655     1655           
  Partials     1256     1256

Flag	Coverage Δ
c-tests	`86.24% <ø> (ø)`
lwt-tests	`80.13% <ø> (ø)`
python-c-tests	`67.13% <ø> (ø)`
python-tests	`99.01% <ø> (ø)`

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Sep 23 '22 16:09 codecov[bot]

Let's update this and merge

Jul 04 '23 14:07 jeromekelleher

Can you squash the commits again please @astheeggeggs? Something has gone a bit haywire, there should only be one commit by the end. (I'm happy to do it, if you prefer)

Jul 05 '23 13:07 jeromekelleher

Yeah, would you mind? I've merged the various conflicts and have checked all the tests I wrote are passing. Seems fine, but my rebasing skills are terrible.

Jul 05 '23 13:07 astheeggeggs

done - should merge automatically now

Jul 05 '23 13:07 jeromekelleher