msprime icon indicating copy to clipboard operation
msprime copied to clipboard

Planned feature: codon sequence evolution models

Open jeromekelleher opened this issue 2 years ago • 0 comments

We should be able to implement models of (independent) codon sequence evolution following the approaches of Arenas and Posada 2007

It's not entirely satisfactory that we'll end up with independent trinucleotides (i.e, each "site" has three bases) but I think this is fine for a first pass, and will help us to start thinking more clearly about the consequences of overlapping sites upstream in tskit.

jeromekelleher avatar Aug 30 '21 13:08 jeromekelleher