tsjain

From the paper, o1 = ReLU Batch [W1 W2] R1 o2 = ReLU Batch [W2 W1] R2 If I reverse(_r) the order of R1 and R2, I get, o2_r =...

The only code where I see a loop over k is in ScoreMatchingNoisedAnglesDataset class. I am not sure that I was able to find the use of the wrapped gaussian...

Scaling of edge network with 0.1

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I did not see where the edge network weights are scaled by 0.1 in the code.

Will ReLU be ever called for single dimensional node_state_dim?

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Since the default configuration of node_hidden_sizes is a vector of length 1, will the layers in the _for_ loop on lines 38:40 ever get created? https://github.com/Lin-Yijie/Graph-Matching-Networks/blob/f63c575ef9c6132207a52d2285cc4583c9947456/GMN/graphembeddingnetwork.py#L38

In order to exclude residues less than _long_interaction_threshold_, the code checks for _residue_number_ value in the pdb dataframe. The _residue_number_ value is identical for residues with insertion codes. Therefore, it...