Thomas Sibley
Thomas Sibley
In #138 I've dropped netifaces and implemented `--host` instead of `--listen` since `--port` already existed. (`--listen` by convention takes a combination of `host:port`.)
We may be able to package Auspice for Windows. However, Augur still remains an issue. We can skip building zika-tutorial with `--native` on Windows, though? This would still test one...
Notes from some quick looking again at CI for Windows. ## Docker runtime Neither the `windows-2022` or `windows-2019` runners that GitHub Actions provides support WSL 2 or Hyper-V, so while...
@huddlej Yeah, this would be good. Biggest issue here is a good UI/UX, I think, though implementation is complicated by Trevor's point in that this feature probably doesn't want to...
I believe this is due to the way Docker implements host → container port mappings on macOS with network redirection rules instead of opening a host port and ferrying data...
Thanks for looking into this @jstoja. I don't have a Mac so can't test directly, but @jameshadfield should be able to. It's definitely possible that Docker on macOS has switched...
Unfortunately, it seems (to me at least) that the [usage policy](https://virusseq-dataportal.ca/acknowledgements) precludes incorporation in our Open dataset. The policy is closer to GISAID's (requires acknowledgement and co-operation with submitters) than...
@bfjia Ah, excellent. The INSDC policy you link to would work, but there are other options too such as a [CC-BY license](https://creativecommons.org/licenses/by/4.0/) (with attribution to CanCOGeN VirusSeq rather than individual...
> As part of this work, we will also need to modify [the Pipfile used to populate the ncov-ingest Docker image](https://github.com/nextstrain/ncov-ingest/blob/726abdfee40ff134ee4d6c73f9e8cd414f88e7e6/Pipfile) by adding the Python bindings for Google Cloud Storage....
Works in the latest image now: ``` $ docker image ls --digests nextstrain/ncov-ingest REPOSITORY TAG DIGEST IMAGE ID CREATED SIZE nextstrain/ncov-ingest latest sha256:2bb78caa7dfc38703724a5a36fa280744256d53f18c18c6e371a6c4048c77b65 d150b94d8afd 20 minutes ago 2.36GB nextstrain/ncov-ingest sha256:63bd513524c1e71eb1ce60c1fd4ac90d21ba443a43865c60062b96bf433e7536...