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freebayes Error: signal 11: when using --targets

Open mlarjim opened this issue 1 year ago • 0 comments

Dear all, I'm having some problems with the --targets argument and I don't know how to solve it:

Error: signal 11:
freebayes(+0xbd51b)[0x7f7c18fe551b]
/lib64/libc.so.6(+0x35670)[0x7f7c182a6670]
/mnt/data-netapp/users/mlara/envs/snippy/bin/../lib/libstdc++.so.6(+0xd7ce7)[0x7f7c18a0bce7]
/mnt/data-netapp/users/mlara/envs/snippy/bin/../lib/libstdc++.so.6(_ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE17find_first_not_ofEPKcmm+0x33)[0x7f7c18a3b913]
freebayes(+0x7f1ab)[0x7f7c18fa71ab]
freebayes(+0x1cede)[0x7f7c18f44ede]
freebayes(+0x5f706)[0x7f7c18f87706]
freebayes(+0x69103)[0x7f7c18f91103]
freebayes(+0xa1cb)[0x7f7c18f321cb]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f7c18292b15]
Error: signal 11:
freebayes(+0xbd51b)[0x7f6faaedc51b]
/lib64/libc.so.6(+0x35670)[0x7f6faa19d670]
/mnt/data-netapp/users/mlara/envs/snippy/bin/../lib/libstdc++.so.6(+0xd7ce7)[0x7f6faa902ce7]
/mnt/data-netapp/users/mlara/envs/snippy/bin/../lib/libstdc++.so.6(_ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE17find_first_not_ofEPKcmm+0x33)[0x7f6faa932913]
freebayes(+0x7f1ab)[0x7f6faae9e1ab]
freebayes(+0x1cede)[0x7f6faae3bede]
freebayes(+0x5f706)[0x7f6faae7e706]
freebayes(+0x69103)[0x7f6faae88103]
freebayes(+0xa1cb)[0x7f6faae291cb]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f6faa189b15]

snippy (v4.4.5) is installed in a conda environment. Later versions fail too. Freebayes version is 1.3.2. If I run freebayes --targets it works perfectly, and freebayes-parallel (without --targets argument) too.

Thank you in advance!

mlarjim avatar Feb 07 '23 12:02 mlarjim