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Bioconda only installs Snippy v3.1
Hello, I've noticed this issue in a previous post, but what worked for that individual does not seem to be working for me. I am running macOS Monterey v12.5 on a 2022 MacBook Pro
I created a new conda environment, then used the conda command from the installation instructions:
conda install -c conda-forge -c bioconda -c defaults snippy
but conda will only install version 3.1, which results in the error
[E::bwa_set_rg] the read group line contained literal <tab> characters -- replace with escaped tabs: \t
when I try to run Snippy
When I attempt to force conda to install a new version of snippy via
snippy>=3.2
I get an error that no such version exists
I've also attempted to install via curl, but that results in the error:
Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module)
during installation, which I have also been unable to resolve.
Any advice would be much appreciated, thanks.
EDIT:
I alternatively tried to install snippy via brew, but it failed with this error:
ld: Assertion failed: (_file->_atomsArrayCount == computedAtomCount && "more atoms allocated than expected"), function parse, file macho_relocatable_file.cpp, line 2061. collect2: error: ld returned 1 exit status make: *** [vt] Error 1