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Snippy-multi issue

Open vinicarvm opened this issue 1 year ago • 2 comments

~ Hi, it's my first time here. I'm trying to run Snippy for the first time with the following script:

snippy-multi ../pwd_assembly --ref ../sequence.fasta --outdir snippy_analise --cpus 16

~ But the terminal shows me:

Reading: ../pwd_assembly ERROR: BAD ID

~ the "pwd_assembly" is my "input.tab" file. The "SRR19844088" it's one of my samples ID (i have 192 samples). The "sequence.fasta" it's my reference sequence. And the "snippy_analise" it's my output directory. I'm showing here bellow an example of my input.tab file:

SRR19844088 /home/vinicarvm/genomas/dados_fastq/SRR19844088_montados/assembly.fasta SRR19844088 /home/vinicarvm/genomas/dados_fastq/SRR19844088_montados/assembly.fasta SRR19844089 /home/vinicarvm/genomas/dados_fastq/SRR19844089_montados/assembly.fasta SRR19844099 /home/vinicarvm/genomas/dados_fastq/SRR19844099_montados/assembly.fasta SRR19844100 /home/vinicarvm/genomas/dados_fastq/SRR19844100_montados/assembly.fasta SRR19844102 /home/vinicarvm/genomas/dados_fastq/SRR19844102_montados/assembly.fasta SRR19844103 /home/vinicarvm/genomas/dados_fastq/SRR19844103_montados/assembly.fasta SRR19844280 /home/vinicarvm/genomas/dados_fastq/SRR19844280_montados/assembly.fasta SRR19844282 /home/vinicarvm/genomas/dados_fastq/SRR19844282_montados/assembly.fasta SRR19844285 /home/vinicarvm/genomas/dados_fastq/SRR19844285_montados/assembly.fasta SRR19844318 /home/vinicarvm/genomas/dados_fastq/SRR19844318_montados/assembly.fasta . . .

vinicarvm avatar Nov 20 '22 03:11 vinicarvm