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Error running snippy

Open dhiru16 opened this issue 1 year ago • 0 comments

bcftools view --include 'FMT/GT="1/1" && QUAL>=100 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0' snps.raw.vcf | vt normalize -r reference/ref.fa - | bcftools annotate --remove '^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL' > snps.filt.vcf dyld[7336]: Library not loaded: @rpath/libcrypto.3.dylib Referenced from: /Users/dhirajchundru/opt/anaconda3/envs/test/bin/vt Reason: tried: '/Users/dhirajchundru/opt/anaconda3/envs/test/bin/../lib/libcrypto.3.dylib' (no such file), '/Users/dhirajchundru/opt/anaconda3/envs/test/bin/../lib/libcrypto.3.dylib' (no such file), '/usr/local/lib/libcrypto.3.dylib' (no such file), '/usr/lib/libcrypto.3.dylib' (no such file) [E::hts_open_format] Failed to open file "snps.raw.vcf" : No such file or directory Failed to read from snps.raw.vcf: No such file or directory Failed to read from standard input: unknown file type zsh: exit 255 bcftools view --include snps.raw.vcf | zsh: abort vt normalize -r reference/ref.fa - |

dhiru16 avatar Sep 23 '22 00:09 dhiru16